Plant Pathogen ‘Omics Initiative

Plant diseases cost Australia millions of dollars each year as they reduce productivity, increase the cost of production, impact on our ability to trade both locally and internationally and adversely affect our environment and biodiversity.

With average temperatures rising and an intensification in the incidence of severe weather events, experts anticipate increased risks in the extent and severity of pest and disease outbreaks. As such, preparedness and awareness are a national priority, and enabling data-driven decision making is essential to this. Researchers and industry stakeholders across Australia, and internationally, are already integrating ‘omics data into developing resistant varieties, chemical and biological controls, and biosecurity surveillance programs. Yet, their progress is impeded by large gaps in the referential data that is available, particularly over space and time, and existing data can be difficult and time consuming to find and access.

The Bioplatforms-supported Plant Pathogen ‘Omics Initiative will generate high quality molecular reference data for plant pathogens in Australia. This data will be developed through collaboration with the national plant pathogen community and will be used as a foundational data asset to support:

a) fundamental research and development in plant protection (e.g., understanding emergence and evolution of pathogens in crop systems, resolving taxonomy and race structure, informing biocide development, etc.); and

b) an effective national biosecurity surveillance system (e.g., incursion detection, rapid diagnostics tests, etc.)

Call for partnerships now closed

The Bioplatforms Australia Plant Pathogen ‘Omics Initiative has seeked partners to nominate and lead projects to generate important genomic data resources for priority plant pathogen species.

Process to submit a partnership proposal:

  1. Please read all of the information on the Call for Partnerships Process webpage before completing the project proposal document.
  2. Please download the proposal template here – Request for Partnership Application Template
  3. Complete one document for each species.
  4. Address all criteria listed.
  5. Answers to all the criteria should not exceed 4 pages.

Deadline: EXTENDED to COB Friday 20th May, 2022. [NOW CLOSED]

Submissions: Please email the completed RFP document to Mabel Lum,, with subject: Plant Pathogen RFP – [Species name].

Parties interested in participating in the Plant Pathogen ‘Omics Initiative, including this RFP, are welcome to get in contact with Mabel Lum at any time.

Project Details

  • Project acknowledgements and citation

    Project DOI:

    NCBI Umbrella Bioproject ID: PRJNA1098054

    Authors: The Plant Pathogen ‘Omics Initiative Consortium

    Funding: Bioplatforms Australia, enabled by NCRIS, and the Plant Pathogen ‘Omics Initiative Consortium

    Keywords: Australian Plant Pathogen, multi-omics, dataset resource, genomics

    Years active: 2022 – present

    How to cite

    Acknowledgements (see Communications policy for further details)

    We would like to acknowledge the contribution of the Plant Pathogen ‘Omics Initiative consortium in the generation of data used in this publication. The Initiative is supported by funding from Bioplatforms Australia, enabled by the Commonwealth Government National Collaborative Research Infrastructure Strategy (NCRIS).


  • Project Contacts

    Jeremy Burdon – Chair


    Mabel Lum – Project Manager


    Sarah Richmond – Program Manager

  • Steering Committee Members
    • Jeremy Burdon – Independent Chair
    • Adrian Dinsdale – The Plant Innovation Centre (PIC@PEQ)
    • Andrew Gilbert – Bioplatforms Australia
    • Brendan Rodoni – Agriculture Victoria
    • Deb Hailstones – NSW DPI
    • Kim Plummer – La Trobe University
    • Mark Gibberd – Centre for Crop and Disease Management, Curtin University
    • Markus Herderich – The Australian Wine Research Institute (AWRI)
    • Neena Mitter – Queensland Alliance of Agriculture and Food Innovation
    • Peter Langridge – University of Adelaide
    • Peter Solomon – Australian National University
    • Robert Coe – Australian Plant Phenomics Facility
    • Sarah Richmond – Bioplatforms Australia
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