Plant Pathogen initiative

Plant Pathogen ‘Omics Initiative

Plant diseases cost Australia millions of dollars each year as they reduce productivity, increase the cost of production, impact on our ability to trade both locally and internationally and adversely affect our environment and biodiversity.

With average temperatures rising and an intensification in the incidence of severe weather events, experts anticipate increased risks in the extent and severity of pest and disease outbreaks. As such, preparedness and awareness are a national priority, and enabling data-driven decision making is essential to this. Researchers and industry stakeholders across Australia, and internationally, are already integrating ‘omics data into developing resistant varieties, chemical and biological controls, and biosecurity surveillance programs. Yet, their progress is impeded by large gaps in the referential data that is available, particularly over space and time, and existing data can be difficult and time consuming to find and access.

The Bioplatforms-supported Plant Pathogen ‘Omics Initiative is generating high quality molecular reference data for plant pathogens in Australia. This data will be developed through collaboration with the national plant pathogen community to build a foundational data asset supporting:

a) fundamental research and development in plant protection (e.g., understanding emergence and evolution of pathogens in crop systems, resolving taxonomy and race structure, informing biocide development, etc.); and

b) an effective national biosecurity surveillance system (e.g., incursion detection, rapid diagnostics tests, etc.)

Call for partnerships 2024 now open

The Bioplatforms Australia Plant Pathogen ‘Omics Initiative has seeked partners to nominate and lead projects to generate important genomic data resources for priority plant pathogen species.

Process to submit a partnership proposal: Please review the Request for Partnership 2024 Submission Guide and complete the proposal form provided on that page to submit your proposal.

Deadline: COB Friday 11th October 2024

Contact information: Parties interested in participating in the Plant Pathogen Initiative, including this RFP, are welcome to get in contact with us at any time.
Mabel Lum, Program Manager, mlum@bioplatforms.com, 0435 387 007
Sarah Richmond, General Manager – Science Program, srichmond@bioplatforms.com, 0411 790 475

Project Details

  • Project acknowledgements and citation

    Project DOI: https://doi.org/10.25953/9595-kd09

    NCBI Umbrella Bioproject ID: PRJNA1098054

    Authors: The Plant Pathogen ‘Omics Initiative Consortium

    Funding: Bioplatforms Australia, enabled by NCRIS, and the Plant Pathogen ‘Omics Initiative Consortium

    Keywords: Australian Plant Pathogen, multi-omics, dataset resource, genomics

    Years active: 2022 – present

    How to cite

    Acknowledgements (see Communications policy for further details)

    We would like to acknowledge the contribution of the Plant Pathogen ‘Omics Initiative consortium in the generation of data used in this publication. The Initiative is supported by funding from Bioplatforms Australia, enabled by the Commonwealth Government National Collaborative Research Infrastructure Strategy (NCRIS).

     

  • Project Contacts

    Jeremy Burdon – Chair

    jeremy.burdon@gmail.com

     

    Mabel Lum – Project Manager

    mlum@bioplatforms.com

     

    Sarah Richmond – Program Manager

    srichmond@bioplatforms.com

  • Steering Committee Members
    • Jeremy Burdon – Independent Chair
    • Adrian Dinsdale – The Plant Innovation Centre (PIC@PEQ)
    • Andrew Gilbert – Bioplatforms Australia
    • Brendan Rodoni – Agriculture Victoria
    • Deb Hailstones – NSW DPI
    • Kim Plummer – La Trobe University
    • Mark Gibberd – Centre for Crop and Disease Management, Curtin University
    • Markus Herderich – The Australian Wine Research Institute (AWRI)
    • Neena Mitter – Queensland Alliance of Agriculture and Food Innovation
    • Peter Langridge – University of Adelaide
    • Peter Solomon – Australian National University
    • Robert Coe – Australian Plant Phenomics Facility
    • Sarah Richmond – Bioplatforms Australia
Back to top