– ABOUT
INTEGRATED PEST MANAGEMENT OMICS INITIATIVE
Through the creation of genomics data, this national program initiated in 2023 is set to transform our understanding of Australia’s diverse pest and beneficial insect populations and will play a pivotal role in supporting data informed integrated pest management (IPM) strategies in Australia.
Australia’s agricultural, forestry, and horticulture sectors, as well as its native ecosystems, are significantly impacted by insects, as beneficial contributors to ecosystem health and productivity, and as devastating pests and vectors of disease. Yet, despite their importance, the vast majority of insect species in Australia remain unidentified.
This initiative represents a significant step towards sustainable management of insect pests in Australia. Fostering research and creating data to increase Australia’s understanding of insects is a critical step in safeguarding agriculture and supporting healthy ecosystems. This initiative underlines the importance of omics data-informed, holistic approach to pest management.
OBJECTIVES
The data created in this initiative aims to support applications across:
- Accelerate insect identification: expedite identification of pest and beneficial insects to enhance monitoring, establish baselines, and identify unique native species.
- Expand knowledge of insect roles: deepen understanding of insect roles in ecosystems, including adaptation, cryptic species, extinction risks, and predator-prey dynamics.
- Support data-driven pest management: provide insights into insecticide resistance and the impacts of pest control on pollination and ecosystems.
DATA
For further information and to view and access initiative data, please go to the Bioplatforms Australia Data Portal.
PROJECTS
| Species name | Project Summary | Data Strategy | Project Lead | Partners |
|---|---|---|---|---|
| Slender furrow bee (Lasioglossum (Homalictus) dotatum) | The project is generating a platinum reference genome for Lasioglossum dotatum to identify genes linked to arid adaptation and desiccation resistance across climate gradients, supporting IPM and pollination in warming, drying climates. It is also investigating gene flow, trait evolution, and resilience to neonicotinoids in this vital pollinator. | Reference genome (PacBio HiFi, HiC), population genetics (Illumina short-read resequencing) | Carmen da Silva | Macquarie University, The University of Sydney, La Trobe University, Adelaide University |
| Stingless bee (Austroplebeia australis) | The project investigates Austroplebeia australis, a stingless bee species crucial for pollination in Australian horticulture. By examining population structure and the genomic basis of arid adaptation, this study is determining if various phenotypic morphs represent discrete populations or species and providing insights into climate resilience in bees. | Reference genome (HiC) | Ros Gloag | The University of Sydney, Macquarie University, The University of Queensland, La Trobe University |
| Blue banded bee (Amegilla pulchra) | The project focuses on Amegilla bees, promising alternatives to exotic bumblebees for pollination in Australasia due to traits like buzz pollination and Solanum flower fidelity. By developing genomic resources, the study is supporting conservation, agro-ecological management, and IPM, with research on sensory ecology, foraging, nesting behaviour, and host-plant interactions. | Reference genome (PacBio HiFI, HiC), population genetics (Illumina), transcriptomics (Illumina) | Simon Tierney | Western Sydney University, United States Department of Agriculture, Wayne State University, CSIRO - Australian National Insect Collection |
| Native bee (Exoneura angophorae) | Exoneura angophorae are common and ecologically significant bees in temperate Australia, known for pollinating apple crops and providing key agro-ecological services. Focusing on comparative evolutionary studies, the project explores functional pollination, social evolution, foraging and nesting behaviour, and adaptation to environmental gradients. | Reference genome (PacBio HiFI, HiC), population genetics (Illumina), transcriptomics (Illumina) | Simon Tierney | CSIRO - Australian National Insect Collection, Macquarie University, Smithsonian Tropical Research Institute, United States Department of Agriculture, Washington State University, Wayne State University, Western Sydney University. |
| Green and gold nomiine bee Lipotriches (Austronomia) australica | This endemic social bee is iconic (featured on postage stamps) and provides pollination services across all mainland states. Members of this subgenus buzz pollinate native Solanum plants and are likely to benefit introduced crops where flower-sonication improves yield (tomato, eggplant, potato). Research goals revolve around functional traits pertaining to horticulture, insect health, vision, foraging ecology and the evolution of cooperative social behaviour. | Reference genome (PacBio HiFI, HiC), transcriptomics (Illumina) | Simon Tierney | Western Sydney University, Princeton University, United States Department of Agriculture, , Wayne State University, CSIRO - Australian National Insect Collection |
| Australian fruit fly parasitoid (Diachasmimorpha kraussii) | This project is generating a reference genome for Diachasmimorpha kraussii, a native parasitoid of the Queensland fruit fly, to explore its diversity and host specialisation. By examining genomic differentiation across populations targeting various fruit fly species, this study enhances IPM and biologically informed control strategies against fruit flies and other fruit pests in Australia. | Reference genome (PacBio HiFI, HiC), transcriptomics (Illumina) | Joshua Thia | The University of Melbourne, Agriculture Victoria |
| Wingless grasshopper (Phaulacridium vittatum) | Phaulacridium vittatum is a native pest affecting pastures, orchards, vineyards, vegetable gardens, and native flora in south-eastern Australia. The study examines the pest's spread potential, invasiveness, and adaptive capacity by comparing mainland and isolated ‘island’ populations. | Reference genome (PacBio HiFI, HiC), Population genetics (Illumina short-read resequencing) | Sonu Yadav | Northern Territory Government, Macquarie University, CSIRO |
| Parasitoid wasps (Spalangia endius and Muscidifurax raptor) | These two parasitoid wasp species, Spalangia endius and Muscidifurax raptor, target house and stable flies for biocontrol. By exploring their genomic diversity and recombination maps, the project seeks to improve mass rearing efficiency and boost the effectiveness of these species as biocontrol agents. | Reference genome (PacBio HiFI, HiC) | Charles Robin | The University of Melbourne |
| Dongara weevil | The Dongara weevil threatens agriculture by damaging crops such as canola. Determining if it is native or invasive is crucial for management—eradication or containment if invasive, sustainable management if native. Genetic data will also be essential for identifying markers of adaptation and resistance to control methods, providing a foundation for effective pest management. | Reference genome (PacBio HiFI, HiC), transcriptomics (Illumina) | Wei Xu | Murdoch University, Western Sydney University, WA Department of Primary Industries and Regional Development, Grains Research and Development Corporation |
| Reed bee (Exoneura robusta) | This project will generate a reference genome for the reed bee Exoneura robusta, a key pollinator of southeastern Australian plants like Acacia and Pultenaea, as well as important crops such as berries, cherries, and apples. With honeybee losses from Varroa mite, E. robusta is becoming increasingly vital for agriculture. By developing genomic and transcriptomic resources, this study will help identify genetic markers for population monitoring - essential for agro-ecological management and provide new insights into the biology of this important and poorly understood native bee. | Reference genome (PacBio HiFi, HiC), transcriptomics (Illumina) | Felipe Martelli | University of Melbourne, La Trobe University |
| Tiphiid wasp (Neozeloboria cryptoides) | With hundreds of known, but yet to be described species, the true number of Australian thynnine wasps (Hymenoptera: Tiphiidae: Thynninae) is predicted to rival the diversity of Australia ants. In these ‘flower wasps’, small flightless females ‘call’ for their larger winged males, by sex pheromones. This unique mating behaviour is exploited by >250 Australian sexually deceptive orchids, which achieve pollination by highly specific sexual mimicry of male thynnine wasps. With a focus on Neozeloboria cryptoides, as a well-known and locally abundant orchid pollinator species, this project will launch the first genomic work on this diverse group of these unique Australian wasps. The aim of the project is to generate the first ‘reference’ mtDNA and nDNA genomes for the group, and a multi-tissue gene expression data set. Collectively, these genomic resources will enable future genetic and phylogenomic studies, sex pheromone odorant receptor and other gene discoveries. It is also expected that new clues about the exploitability of male thynnine wasps by Australian sexually deceptive orchids will be uncovered. | Reference genome (ONT, HiC), transcriptomics (Illumina) | Rod Peakall | Australian National University |
| Portuguese millipede (Ommatoiulus moreleti) | Investigating dispersal patterns of invasive species using genetic data has become a promising approach in invasion research. This project aims to model connectivity and dispersal of invasive species at two spatial scales: (1) among major metropolitan areas of southern Australia, and (2) at a fine scale within the Perth metropolitan region. By developing our understanding of invertebrate dispersal patterns, we can better predict, monitor and manage the spread of invasive pests. | Reference genome (PacBio HiFi) | Brenton von Takach | Curtin University |
| bird cherry-oat aphid (Rhopalosiphum padi) | Investigations on evolution of Buchnera–aphid host symbioses within species offer a different perspective about how eco-evolutionary processes shape patterns of genetic variation at microevolutionary scales. We hypothesize that a predominance of neutral processes results in the Buchnera of R. padi to simply ‘drift’ with the evolutionary trajectory of their aphid hosts. Our study will present a unique microevolutionary characterization of Buchnera–aphid host genomic covariation across multiple aphid clones. | Reference genome (PacBio HiFi), population genomics (Illumina) | Qiong Yang | University of Melbourne |
| Kelly's citrus thrips (Pezothrips kellyanus) | This project will generate a reference genome of Kelly’s citrus thrips (KCT) Pezothrips kellyanus), an Australian-native pest species that has become invasive in New Zealand, other Pacific islands and the Mediterranean region. KCT is naturally associated with cytoplasmic incompatibility-inducing Wolbachia and Cardinium bacteria. Having the genomes of KCT and its endosymbionts will allow us to decipher host-endosymbiont interactions that have high potential for the control of this and other haplodiploid pest and plant pathogen vectors. | Reference genome (PacBio HiFi, HiC), population genomics (Illumina), transcriptomics (Illumina) | Markus Riegler | Western Sydney University, Department of Primary Industries, New South Wales |
| Cutworm (Agrotis munda) | Agrotis is an important genus of moths containing both significant crop pests and species of conservation concern. This project aims to provide a better understanding of A. munda, A. infusa and A.ipsilon larvae through exploring whether genetic variants can be used to infer natal origin. This project will provide key insights into the genetic basis of migratory behaviour of crop pests and moths of conservation value. | Population genomics (Illumina) | Eleanor Drinkwater | Western Sydney University, CSIRO, NSW Botanic Gardens, Lund University (Sweden) |
| Cutworm (Agrotis ipsilon) | Agrotis is an important genus of moths containing both significant crop pests and species of conservation concern. This project aims to provide a better understanding of A.ipsilon larvae through exploring whether genetic variants can be used to infer natal origin. This project will provide key insights into the genetic basis of migratory behaviour of crop pests and moths of conservation value. | Population genomics (Illumina) | Eleanor Drinkwater | Western Sydney University, CSIRO, NSW Botanic Gardens, Lund University (Sweden) |
| Orange Blowflies (Calliphora ochracea and Calliphora nigrithorax) | This project will generate a high-quality genome for Calliphora ochracea and C. nigrithorax, key native decomposers in Australia’s forests. Unlike their parasitic and invasive cousins, these species play vital roles in maintaining ecosystem health. By comparing their genome to parasitic blowflies, we aim to uncover the genetic shifts that drive parasitism. These insights could revolutionize our understanding of blowfly evolution and lead to smarter, more targeted approaches to managing devastating pests like the sheep blowfly. | Reference genome (PacBio HiFi), population genomics (Illumina) | Nikolas Johnston | University of Wollongong, La Trobe University, University of Waikato (NZ), CSIRO |
| Eucalyptus weevil (Gonipterus platensis) | This project aims to integrate high-resolution genomic tools into an existing, long-term biocontrol program targeting two invasive weevil species (Gonipterus platensis, G. sp. 2) in Eucalyptus globulus plantations across Western Australia. Using a combination of reference genome sequencing and genotyping-by-sequencing (GBS), we will generate foundational genomic resources to assess adaptation, population structure, and biocontrol efficacy of the parasitoid, Anaphes nitens, a key biocontrol agent. | Reference genome (PacBio HiFi), population genomics (Illumina) | Andy Howe | University of the Sunshine Coast, University of Queensland, Psymbiotika Lab, Australian Bluegum Plantations Pty Ltd, Plantation Industry Pest Management Group, University of South Australia |
| Eucalyptus weevil (Gonipterus sp. n. 2) | This project aims to integrate high-resolution genomic tools into an existing, long-term biocontrol program targeting two invasive weevil species (Gonipterus platensis, G. sp. 2) in Eucalyptus globulus plantations across Western Australia. Using a combination of reference genome sequencing and genotyping-by-sequencing (GBS), we will generate foundational genomic resources to assess adaptation, population structure, and biocontrol efficacy of the parasitoid, Anaphes nitens, a key biocontrol agent. | Reference genome (PacBio HiFi) | Andy Howe | University of the Sunshine Coast, University of Queensland, Psymbiotika Lab, Australian Bluegum Plantations Pty Ltd, Plantation Industry Pest Management Group, University of South Australia |
| Fruit spotting bug (Amblypelta nitida) | Fruit spotting bug is one of the two spotting bug species that are considered high priority pests in several of Australia's key horticultural industries. These bugs feed on the fruiting structures of several tree and vine crops, causing extensive damage to fruit that often renders it unsaleable. Developing genomic data for fruit spotting bug will aid in accurate identification of the species and potentially allow for the identification of genes involved olfactory pathways which will be useful for on-going or future projects exploring the use of lures as a monitoring tool. Genetic data will also allow for the monitoring of insecticide resistance levels within fruit spotting bug populations. | Reference genome (PacBio HiFi, HiC), population genomics (Illumina), transcriptomics (Illumina) | Dalton Baker | University of Queensland |
| Banana spotting bug (Amblypelta lutescens lutescens) | Banana spotting bug is one of the two spotting bug species that are considered high priority pests in several of Australia's key horticultural industries. These bugs feed on the fruiting structures of several tree and vine crops, causing extensive damage to fruit that often renders it unsaleable. Developing genomic data for banana spotting bug will aid in accurate identification of the species and potentially allow for the identification of genes involved olfactory pathways which will be useful for on-going or future projects exploring the use of lures as a monitoring tool. Genetic data will also allow for the monitoring of insecticide resistance levels within banana spotting bug populations. | Reference genome (PacBio HiFi, HiC), population genomics (Illumina), transcriptomics (Illumina) | Dalton Baker | University of Queensland |
| Citrus blossom bug (Austropeplus sp.) | Citrus blossom bug is an emerging pest of the Australian avocado industry and is suspected to affect other fruit cops such as macadamia and mango. These mirids feed on developing inflorescence and can cause signficant reductions in fruit set rates. Developing genomic data for citrus blossom bug will aid in accurate identification of the species and potentially allow for the identification of genes involved olfactory pathways which will be useful for future projects exploring the use of lures as a monitoring tool. The availability of genetic data for this mirid species will also contribute a better understanding of mirid genetics, as it remains a largely under-represented group. | Reference genome (PacBio HiFi, HiC), population genomics (Illumina) | Dalton Baker | University of Queensland |
| White Italian Snail (Theba pisana) | The white Italian snail (Theba pisana) was introduced to Australia over 100 years ago, and has become a major pest to the grains industry due to its capacity to withstand extreme environmental conditions. Genomic investigation will facilitate the elucidation of molecular components that underlie its metabolic and physiological processes, with a focus on reproductive capacity. This knowledge will be used to develop eco-friendly species-specific biocontrol strategies that target its essential life processes, and inform similar approaches of biocontrol for other pest land snail species (e.g. common brown snail). | Reference genome (PacBio HiFi, HiC), population genomics (Illumina), transcriptomics (Illumina) | Scott Cummins | University of the Sunshine Coast, University of Melbourne, University of Adelaide |
| Phorid fly (Dohrniphora trigonae) | Phorid flies are a major pest of Australian native bees and destroy many hives each year. This project seeks to use genomics to understand how phorid flies find stingless bee hives, what smells they are attracted to, and ultimately develop traps to reduce the impact of phorid flies on stingless bees. | Reference genome (PacBio HiFi, HiC), population genomics (Illumina), transcriptomics (Illumina) | James Hereward | The University of Queensland |
| Rutherglen Bug (Nysius vintor) | This Difficult Pests Project will decode the complete genome of Nysius vinitor, a key native pest affecting agricultural production in seed crops such as canola, sunflower and carrot seed in Australia. The aim is to uncover the genetic basis of the behaviour of this migratory species to understand how it responds to cues for dispersal, navigation and crop location in order to facilitate targeted pest management strategies. By elucidating critical genomic features, the information can enhance IPM approaches, ultimately reducing crop losses and chemical use to promote sustainable production in agriculture. | Reference genome (PacBio HiFi), transcriptomics (Illumina) | Lynne Forster | University of Tasmania |
| Australian Crop Mirid (Sidnia kinbergi) | The native Australian crop mirid, is an increasingly problematic pest, affecting lucerne, beans, berries. For the Difficult Pests Project, a reference genome will be analysed to identify genes associated with dispersal, host switching, and climate adaptation in a warming temperate climate. This information will help to develop targeted ecologically sustainable IPM strategies that growers can apply for effective control. | Reference genome (PacBio HiFi), transcriptomics (Illumina) | Lynne Forster | University of Tasmania |
| Bronze leaf beetle (Diachus auratus) | Despite its presence in Australia since 1986, Diachus auratus has only recently become a pest, causing distortion of berry fruit and economic losses. Its cryptic and well-defended eggs and larvae protect this global pest from many conventional management stratgies. This Difficult Pests Project will analyse the whole genome to understand the genetics of its parthenogenesis, host switching and climate adaptation to develop IPM strategies that could be implemented locally and globally. | Reference genome (PacBio HiFi), transcriptomics (Illumina) | Lynne Forster | University of Tasmania |
| Harlequin Bug (Dindymus versicolor) | With the reduction of broad-spectrum chemicals in IPM, the native harlequin bug, has re-emerged as a pest causing damage in pome fruit, stone fruit, berries and tomatoes, with no known biocontrol agents and no registered sprays. In this Difficult Pests Project, whole genome data will be used to identify the genetic structure of host switching and polyphagy in Dindymus versicolor and seasonality of its behaviour. This information will be used to develop targeted IPM strategies to be implemented for sustainable food production. | Reference genome (PacBio HiFi), transcriptomics (Illumina) | Lynne Forster | University of Tasmania |
| Pear and cherry slug (Caliroa cerasi) | Pear and cherry slug is a sawfly larva that is a global pest. It reduces tree vigour and yield. In this Difficult Pests Project, whole genome data will be examined for novel insights into its parthenogenetic biology and behaviour including the genetic nature of the vulnerability of larvae to desication without its unusual mucous covering. These insights will provide opportunities to develop IPM solutions that growers can include in their transition to an organic cherry industry for sustainable food production. | Reference genome (PacBio HiFi), transcriptomics (Illumina) | Lynne Forster | University of Tasmania |
| Eucalypt ringbarker Longicorn (Phoracantha mastersi) | A reference P. mastersi genome will allow understanding of the specific relationship between beetle and its parasitoid in the snow gum system. The lack of molecular systematics to support Phoracantha taxonomy is impeding effective IPM. Sequencing of the beetle genome in association with parasitised eggs and wasp emergence is needed to resolve uncertainties associated with the beetle-parasitoid interaction. This will inform land and environmental policies allowing implementation of IPM solutions. | Reference genome (PacBio HiFi, HiC), population genomics (Illumina), transcriptomics (Illumina) | Leon Court | CSIRO Environment, Australian National University |
| Chilli thrip (Scirtothrips dorsalis) | Scirtothrips dorsalis is a highly polyphagous pest that poses a significant biosecurity threat to Australian horticulture, particularly capsicum, mango and citrus industries. This project aims to generate a high-quality reference genome to resolve taxonomic uncertainties and support the development of molecular diagnostics. The data will inform surveillance, improve species identification, and guide incursion response strategies. Expected outcomes include strengthened biosecurity preparedness and more effective management of exotic thrips risks. | Reference genome (PacBio HiFi), population genomics (Illumina), transcriptomics (Illumina) | Julia Grassl | WA DPIRD |
| American serpentine leafminer (Liriomyza trifolii) | This project will generate whole genome resequencing data from Liriomyza trifolii, the American serpentine leafminer. This global pest invaded Australia in 2021 and is now present in WA, NT, and QLD. Sequence data will be used to understand invasion routes and subsequent spread of this pest in Australia, patterns of natural selection at insecticide resistance genes, and infections of Wolbachia bacteria. These data will also be used for tracing new invasions and incursions of this species. | Population genomics (Illumina) | Thomas Schmidt | University of Melbourne, Department of Primary Industries (Queensland), Department of Agriculture and Water Resources, Northern Territory Government |
| Twisted wing parasitoid of fruit flies (Dipterophagus daci) | Dipterophagus daci (Strepsiptera) is worldwide the only endoparasitoid of adult tephritids, including Queensland fruit fly, Australia’s most damaging horticultural pest. The prevalence of D. daci is likely underestimated, as parasitisation only becomes apparent in late stages. It has the potential to sterilise hosts and affect their behaviour. Assembly of the D. daci genome and its microbiota will help understand host-parasitoid interactions, insect immunity, development and evolution. Expanding our knowledge and tools will maximise D. daci effectiveness in fruit fly control. | Reference genome (PacBio HiFi, HiC), population genomics (Illumina), transcriptomics (Illumina) | Jennifer Morrow | Western Sydney University, Department of Primary Industries, Queensland |
| Fairywasp (Anaphes nitens (Hymenoptera: Mymaridae)) | This project aims to integrate high-resolution genomic tools into an existing, long-term biocontrol program targeting two invasive weevil species (Gonipterus platensis, G. sp. 2) in Eucalyptus globulus plantations across Western Australia. Using a combination of reference genome sequencing and genotyping-by-sequencing (GBS), we will generate foundational genomic resources to assess adaptation, population structure, and biocontrol efficacy of the parasitoid, Anaphes nitens, a key biocontrol agent. | Reference genome (PacBio HiFi), population genomics (Illumina) | Andy Howe | University of the Sunshine Coast, University of Queensland, Psymbiotika Lab, Australian Bluegum Plantations Pty Ltd, Plantation Industry Pest Management Group, University of South Australia |
| Hymenopteran encyrtid egg endoparasitoid (Avetianella longoi) | A reference wasp genome will allow understanding of the specific relationship between wasps and beetles affecting snow-gum forests. Two genetically different wasp (i.e., R and S) strains are reported and are effective against different Phoracantha spp. Sequencing of wasp genomes in parasitised eggs will identify the right wasp strain for IPM, resolve current taxonomic uncertainties and clarify wasp biodiversity. This will inform land and environmental policies and enable effective IPM solutions. | Reference genome (PacBio HiFi, HiC), population genomics (Illumina), transcriptomics (Illumina) | Leon Court | CSIRO Environment, Australian National University |
| Eastern Paralysis Tick (Ixodes holocyclus) | This project investigates how ticks synthesise and transmit α-Gal, the molecule responsible for alpha-gal syndrome (AGS)—a serious tick-borne allergy to mammalian meat affecting thousands of Australians. Focusing on the paralysis tick Ixodes holocyclus, the team will use genomics and transcriptomics to uncover the biological pathways driving α-Gal biosynthesis and immune sensitisation. This work fills a critical knowledge gap in AGS research and positions CSIRO at the forefront of developing future diagnostics, therapeutics, and intervention strategies. | Reference genome (PacBio HiFi, HiC), transcriptomics (Illumina) | Alexander Gofton | CSIRO |
| Asian tiger mosquito (Aedes albopictus) | The Asian tiger mosquito (Aedes albopictus) is the world’s most invasive mosquito and vector of dengue, chikungunya, zika, and yellow-fever viruses. Aedes albopicus invaded the Torres Strait in 2005 and threatens to invade the mainland, where could establish as far south as Melbourne. This project will provide population genomics that supports to the evaluation of of novel genetic biocontrol agents aimed at supressing Ae. albopictus populations and removing this biosecurity and health threat. | Reference genome (PacBio HiFi, HiC) | Alexander Gofton | CSIRO |
| Australian backyard mosquito (Aedes notoscriptus) | This project will generate whole genome resequencing data for Aedes notoscriptus, the Australian backyard mosquito. This species is a major human and animal disease vector across Australia and has recently invaded California, USA, and New Zealand. Pilot data show Aedes notoscriptus is a species complex and this project will characterise this complex across its range. This will provide critical insight for future IPM using Wolbachia, and for investigating differences in disease transmission among cryptic lineages. | Population genomics (Illumina), transcriptomics (Illumina) | Thomas Schmidt | University of Melbourne, University of the Sunshine Coast, Murdoch University |
| Australian Cattle Tick (Rhipicephalus australis) | This project aims to produce the first chromosome-level genome of the Australian cattle tick (Rhipicephalus australis), which spreads Tick fever, impacting cattle health and reduces productivity and welfare of the animals. Currently, no reference genome is available for this economically important species. The resulting genome will support improved tick control, better disease diagnosis, transmission control and surveillance, helping Australian’s livestock industry through improved animal production and welfare. | Reference genome (PacBio HiFi, HiC), transcriptomics (Illumina) | Asif Ahmed | CSIRO Australian Centre for Disease Preparedness, University of Queensland |
| Buffalo flies (Haematobia irritans exigua) | This project will generate the first high-quality, chromosome-level genome assembly for the Australian buffalo fly (Haematobia irritans exigua), a major cattle pest causing significant economic and welfare impacts. The genome will be used to identify genetic markers of insecticide resistance, targets for RNAi, and gene editing. These resources will support the development of sustainable, next-generation control strategies. Further, the outcomes will benefit researchers, industry, and government partners managing buffalo fly infestations across Australia. | Reference genome (PacBio HiFi, HiC), transcriptomics (Illumina) | Mukund Madhav | CSIRO Australian Centre for Disease Preparedness, University of Queensland |
PARTNERS
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advisory committee members
Prof. Ary Hoffmann (Chair) – University of Melbourne
Prof. David Yates – CSIRO
Prof. James Cook – Western Sydney University
Dr Rachel Dudaniec – Macquarie University
Dr Andrew Weeks – Cesar Australia
Prof. Owain Edwards – Entozyme (formerly CSIRO)
Dr Sonu Yadav – Northern Territory Department of Industry
Prof. Dianne Gleeson – University of Canberra
Dr Jeff Christiansen – Australian BioCommons
Dr Kelly Scarlett – Bioplatforms Australia
KEY INFORMATION
ACKNOWLEDGEMENT INFORMATION
Bioplatforms Initiative DOI: https://doi.org/10.25953/yqw4-8w70
Umbrella Bioproject ID: PRJNA1098055
Please use this ID when submitting any derived data to a database that is a member of the International Nucleotide Sequence Database Collaboration (INSDC), such as GenBank/NCBI, ENA or DDBJ.
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Citation Guidelines
To cite the general initiative:
The Integrated Pest Management Omics Initiative, 2023, https://doi.org/10.25953/yqw4-8w70
To cite a specific dataset:
The Integrated Pest Management Omics Initiative, 2023, https://doi.org/10.25953/yqw4-8w70, [year-of-data-download], [full dataset title], [dataset-access-URL], accessed [date-of-access].
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Acknowledgement Statement
We would like to acknowledge the contribution of the Integrated Pest Management Omics Initiative Consortium in the generation of data used in this publication. The Initiative is supported by funding from Bioplatforms Australia, enabled by the Commonwealth Government National Collaborative Research Infrastructure Strategy (NCRIS).
If relevant, also credit other organisations involved in collection of the particular dataset you are using, as listed in the ‘project_lead’ and ‘project_collaborators’ in the metadata record.
CONTACT US
Project Manager
Aude Touffu – Bioplatforms Australia
atouffu@bioplatforms.com
Science Lead
Ary Hoffmann – University of Melbourne
Partnerships and Engagement Lead
Kelly Scarlett – Bioplatforms Australia
kscarlett@bioplatforms.com
DATA AND COLLABORATION POLICY
Data generated through this initiative is subject to the Data and Collaboration policy. Please review it here.